Basic Information
VIS ID
TVIS30013712
Fusion event
HIV-ANXA1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
75784339/73169423 (Hg38)
End
75784339/73169423 (Hg38)
Orient
+
Location type
Intronic
Target gene
ANXA1
miRNAs that regulate target gene
hsa-mir-196a-5p ; hsa-mir-335-5p ; hsa-mir-30a-5p ; hsa-mir-26b-5p ; hsa-mir-221-3p
Nearest miRNA
hsa-mir-101-2/Upstream/2359339; hsa-let-7a-1/Downstream/10800325;
Nearest TSS
ENST00000422679/Upstream/1325; ENST00000422909/Downstream/404192;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/803595, chr9-CpG: 43/Downstream/1327439
Nearest cancer related gene
ANXA1(TSG, No orient, 0)
Upstream sequence
TAGTGAGTTCTCTACTGAAATACTGGGTACATTTTTCAACTAAAGTCATGGAAACATTTAGTTTCCCATGCATAAATTCAGCAAGCAGAATATTCTAGTG
Downstream sequence
TTCCCCCTAGGGTAGATAGACATTGTGGTTTATTTTGCCATTAATATTTGTCAGAGGATTAGAAACTCCTTATTCAAAATATTTATCTTAATTCTATCAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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