Basic Information
VIS ID
TVIS30013713
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
77305600/74690684 (Hg38)
End
77305600/74690684 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/3880600; hsa-let-7a-1/Downstream/9279064;
Nearest TSS
ENST00000422679/Upstream/75084; ENST00000455609/Downstream/143373;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/191673, chr9-CpG: 48/Downstream/196493
Nearby gene
RORB(No orient, 3483)
Upstream sequence
TAAAGCAAAATCGCATCTGGGGCCAGCTCAACTGCAGCAAGTCTGGTCAGATTCAACCCTGGACGATATTAGAATGATATTAGTTTTGGAAGGAGGGGAT
Downstream sequence
GGAGATCTTCCCCTTCTAATACTCAATTTTGTTTTGGTATTTGATTGTCACAACTAGAGGATATAACAGGAGGTCAGTTTAAAAAATAGCAAACAGTCTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate