VISDB Viral Integration Site DataBase

VIS ID

TVIS30013718

Fusion event

HIV-AGTPBP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q21.33

Reference genome

Start

End

88235803/85620888 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-32-5p ; hsa-mir-493-5p ; hsa-mir-576-5p ; hsa-mir-4735-5p ; hsa-mir-4775 ; hsa-mir-590-3p ; hsa-mir-548e-5p ; hsa-mir-6836-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-150-5p ; hsa-mir-99b-3p ; hsa-mir-99a-3p ; hsa-mir-6830-5p ; hsa-mir-6507-5p ; hsa-mir-5096 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-4701-5p ; hsa-mir-588 ; hsa-mir-548s ; hsa-mir-197-3p ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-4529-5p ; hsa-mir-4653-3p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6134 ; hsa-mir-4716-5p ; hsa-mir-4781-3p ; hsa-mir-4728-3p ; hsa-mir-615-5p ; hsa-mir-6128 ; hsa-mir-4254 ; hsa-mir-3690 ; hsa-mir-4699-3p ; hsa-mir-6501-3p ; hsa-mir-4797-5p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-6787-3p ; hsa-mir-1281 ; hsa-mir-660-3p ; hsa-mir-4485-5p ; hsa-mir-6736-3p ; hsa-mir-6513-3p ; hsa-mir-1285-5p ; hsa-mir-8062 ; hsa-mir-6083 ; hsa-mir-1343-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-4279 ; hsa-mir-4494 ; hsa-mir-4722-3p ; hsa-mir-499b-5p ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-6783-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p

Nearest miRNA

hsa-mir-101-2/Upstream/1651031; hsa-let-7a-1/Downstream/3124948;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/97818, chr9-CpG: 127/Downstream/120337

Upstream sequence

atgctccttcgaaagggATGGTAATTTGTTATCCTAATGAAATGAAGGCTCAGTATTGCAAGACAAGCCAGCATTTCATATAAAATATCCACTCTCCTAA

Downstream sequence

GTGAAAGTAATTTCAGTTTTTCAAAAATACAACATCATTGTGTAACCTTTACCTCAAGCCCATTAAAAATCTACCTAAAAACAAACAAAATCTCGTGATA