Basic Information
VIS ID
TVIS30013720
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
89749343/87134428 (Hg38)
End
89749343/87134428 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/3164571; hsa-let-7a-1/Downstream/1611408;
Nearest TSS
ENST00000422679/Upstream/92302; ENST00000623052/Downstream/14216;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/122601, chr9-CpG: 40/Downstream/13993
Nearby gene
C9orf170(No orient, 14216)
Upstream sequence
tgcacacatatcgcagaacttaaaataaaatttaaaaaaaaaaggaaaatagtatggggttttcttaaaaaactaaaaatagaactattataagatctag
Downstream sequence
caatctcactactgggtattcattcaaagaaaagaaaatcagtatatcaaagagatatatgtatccccatgtttcttgcaacactattcacaatagcaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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