Basic Information
VIS ID
TVIS30013721
Fusion event
HIV-SECISBP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
91938679/89323764 (Hg38)
End
91938679/89323764 (Hg38)
Orient
-
Location type
Intronic
Target gene
SECISBP2
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-142-3p ; hsa-mir-26b-5p ; hsa-mir-744-5p ; hsa-mir-130b-5p ; hsa-mir-642b-5p ; hsa-mir-6513-3p ; hsa-mir-4762-5p ; hsa-mir-4255
Nearest miRNA
hsa-mir-101-2/Upstream/11458; hsa-let-7a-1/Downstream/699677;
Nearest TSS
ENST00000422679/Upstream/1564; ENST00000440898/Downstream/2196;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/4772, chr9-CpG: 21/Downstream/57272
Upstream sequence
GTGTGTTACTGTGGGTTTAGGGTCATCTGGGCCACTCCTGGCATCTGGAATTTCCCAGACATGCCATTTGAAGCCACGCCAGATGCTGTGAGTTACTGCT
Downstream sequence
TTGATGTTTTGTATTTTGTGTTGTTTTCTGCATGTAATTGTGTTTGCACTGGATGGAAATGGAAAATACCAactttccagaggaggaaggaccagtgagg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate