Basic Information
VIS ID
TVIS30013722
Fusion event
HIV-SECISBP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
91945604/89330689 (Hg38)
End
91945604/89330689 (Hg38)
Orient
-
Location type
Intronic
Target gene
SECISBP2
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-142-3p ; hsa-mir-26b-5p ; hsa-mir-744-5p ; hsa-mir-130b-5p ; hsa-mir-642b-5p ; hsa-mir-6513-3p ; hsa-mir-4762-5p ; hsa-mir-4255
Nearest miRNA
hsa-mir-101-2/Upstream/18383; hsa-let-7a-1/Downstream/692752;
Nearest TSS
ENST00000422679/Upstream/4729; ENST00000440898/Downstream/1899;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/11697, chr9-CpG: 21/Downstream/50347
Upstream sequence
GTAGCAGTTTGCATGCAGGACCCTCATACAGTTGTACCCTCACACTGTTGTAGCATGGTGCTTTCCTGTCAAAGAGCTGGGAGAAGTCAGGCCAACTGAT
Downstream sequence
GGCTATCTAAAAATCATAGTTCCATCTGGCCTGCTCCAGGGGCTCCAGGCTGGGTTTGTGCGGTGGCTGAATAGCCACGGCGCTGCCGGTCTTCATCACG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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