Basic Information
VIS ID
TVIS30013724
Fusion event
HIV-UNQ6494 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
92317870/89702955 (Hg38)
End
92317870/89702955 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
UNQ6494
Nearest miRNA
hsa-mir-101-2/Upstream/390649; hsa-let-7a-1/Downstream/320486;
Nearest TSS
ENST00000422679/Upstream/1304; ENST00000421297/Downstream/96740;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/26346, chr9-CpG: 20/Downstream/939739
Upstream sequence
tcaataacaaaaagaccaatagttcaaaaggattaaaatatattaataaaagttttcagacaagggaatacaaacagttttaagcacatgaaaTATGTAA
Downstream sequence
GAGCTATATTGAAATTTTTAAAGAGCAGGGttttttaaaattttatttttattttttgagacagagtttcattctgtggcccaggctggagtacagtgtc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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