Basic Information
VIS ID
TVIS30013732
Fusion event
HIV-PTCSC2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.33
Reference genome
GRCh37/hg19
Start
100556275/97793993 (Hg38)
End
100556275/97793993 (Hg38)
Orient
-
Location type
Intronic
Target gene
PTCSC2
Nearest miRNA
hsa-let-7a-1/Upstream/430312; hsa-mir-12126/Downstream/435156;
Nearest TSS
ENST00000422679/Upstream/50785; ENST00000375123/Downstream/16015;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/52259, chr9-CpG: 53/Downstream/9480
Nearby gene
FOXE1(No orient, 59262)
Upstream sequence
gggtaatttataaaagaaagagatttaattgactcgcagttcagcatggctggggaggcctcaggaaacttacaatcatggtggaatgggaagccaacac
Downstream sequence
gtacttcttcacatggtagcaggaagcaaaagtgctgagcaaaagggggaaaaggcccttataaaaccatcagatcttgtgagaactcactcattatcac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate