VISDB Viral Integration Site DataBase

VIS ID

TVIS30013734

Fusion event

HIV-TGFBR1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q22.33

Reference genome

Start

End

101886322/99124040 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-let-7c-5p ; hsa-mir-204-5p ; hsa-mir-128-3p ; hsa-mir-140-5p ; hsa-mir-142-3p ; hsa-mir-101-3p ; hsa-mir-98-5p ; hsa-let-7d-5p ; hsa-let-7f-5p ; hsa-mir-130a-3p ; hsa-mir-181a-5p ; hsa-let-7g-5p ; hsa-let-7b-5p ; hsa-mir-1343-3p ; hsa-mir-6783-3p ; hsa-mir-202-5p ; hsa-mir-1283 ; hsa-mir-4668-5p ; hsa-mir-8083 ; hsa-mir-27a-3p ; hsa-mir-216a-3p ; hsa-mir-27b-3p ; hsa-mir-3681-3p ; hsa-mir-3927-3p ; hsa-mir-6831-5p ; hsa-mir-376c-3p ; hsa-mir-135b-5p ; hsa-mir-6826-3p ; hsa-mir-6795-3p ; hsa-mir-6887-3p ; hsa-mir-3156-5p ; hsa-mir-4480 ; hsa-mir-8063 ; hsa-mir-6888-3p ; hsa-mir-466 ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-3529-5p ; hsa-mir-379-5p ; hsa-mir-490-3p ; hsa-mir-20a-5p ; hsa-mir-181c-5p ; hsa-mir-199a-5p

Nearest miRNA

hsa-let-7a-1/Upstream/894823; hsa-mir-12126/Downstream/7476888;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/18178, chr9-CpG: 112/Downstream/97397

Upstream sequence

ATGATGAAATAGGTCAGAGAGGTATTATGTTTATTTTCCTGATGAAATAAAACATCGTAGTTAGCATCTTGAACAATTTAAATTTGATCATCTTACTTGG

Downstream sequence

TATGCCAGCCACTAAGGATGAAATCCTGCCACTGAGAAAGAAAACCCAGTCAGGAAAGCTTTCTCACCCTTATCTATCTAACAAATTGTACATATTCTCC