Basic Information
VIS ID
TVIS30013736
Fusion event
HIV-GRIN3A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
104377206/101614924 (Hg38)
End
104377206/101614924 (Hg38)
Orient
-
Location type
Intronic
Target gene
GRIN3A
miRNAs that regulate target gene
hsa-mir-542-5p
Nearest miRNA
hsa-let-7a-1/Upstream/3385707; hsa-mir-12126/Downstream/4986004;
Nearest TSS
ENST00000422679/Upstream/1402; ENST00000374801/Downstream/123656;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/80974, chr9-CpG: 115/Downstream/122643
Upstream sequence
cccaggctggtcttgaactcctggagtcaaccagtccactcacctcagcctctcaaagtgatgggattacaggtatgagccacgtgcccagcctgtgata
Downstream sequence
atacttattatttttaacaaaaccaaggataaaataaatgaaagggtggtggtaatgcagggcaagggaggcaggggaaggaatgagggaggaacataaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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