Basic Information
VIS ID
TVIS30013737
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
105423046/102660764 (Hg38)
End
105423046/102660764 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/4431547; hsa-mir-12126/Downstream/3940164;
Nearest TSS
ENST00000422679/Upstream/141128; ENST00000612124/Downstream/334547;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/921970, chr9-CpG: 38/Downstream/1338585
Nearby gene
LINC00587(No orient, 3255)
Upstream sequence
ATGACTTTTGACTtcctacatatcttgctgaaaatgctaacataacaaaaccttacttcaggccacttctgaggattatAATGTACAAACCTAAAGTATT
Downstream sequence
GTAGTggccaggcatggttgctcacacctataatctgagcactttgggaggccaaggcggatggatcacctgcagttaggagttcaagaccagcctggcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate