Basic Information
VIS ID
TVIS30013738
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
108452514/105690233 (Hg38)
End
108452514/105690233 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/7461016; hsa-mir-12126/Downstream/910695;
Nearest TSS
ENST00000422679/Upstream/27776; ENST00000434214/Downstream/4311;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/33580, chr9-CpG: 80/Downstream/4186
Nearby gene
TMEM38B(No orient, 4292)
Upstream sequence
ACTTGTTATACATGGAGAACATTTTTAGTTTACTAGTTTATATTAGTGGTATGAATGACGATTATAGAAAAGGATTTTAGTTTCCAGTGCAATAAATAAG
Downstream sequence
TGAGCCATGTCAGGTTTTCCAAGACACAATATCAAAGGCACTATTATTAGATACATGCTGAGTCTAAAGAGTTGAGTGTATACTTGAATTGGTTGCACTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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