Basic Information
VIS ID
TVIS30013740
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q32
Reference genome
GRCh37/hg19
Start
117649443/114887163 (Hg38)
End
117649443/114887163 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA9E
Nearest miRNA
hsa-let-7a-1/Upstream/677634; hsa-mir-12126/Downstream/5357816;
Nearest TSS
ENST00000422679/Upstream/81037; ENST00000477580/Downstream/17145;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/275367, chr9-CpG: 77/Downstream/1266920
Nearby gene
TNFSF8(No orient, 6180)
Upstream sequence
ATCAGATCGGCACAGCTAATTTCTCCTGTAGATCTTTCTTCCCTGGCTGGCCAAGGGTGAAGCCCTCCAAAGCCAAACCCCACAGGATTGCTCCCTGGAC
Downstream sequence
TTACCACAGGAGTTCTACCACTTCTACATTCCCATAACATTCCTTGAATTAAAttagtccctcaggtcctctttatcttatctttgcattgggaataatc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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