Basic Information
VIS ID
TVIS30013756
Fusion event
HIV-ST6GALNAC6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
GRCh37/hg19
Start
130651943/127889664 (Hg38)
End
130651943/127889664 (Hg38)
Orient
+
Location type
Intronic
Target gene
ST6GALNAC6
Nearest miRNA
hsa-let-7a-1/Upstream/20169; hsa-mir-12126/Downstream/355057;
Nearest TSS
ENST00000422679/Upstream/4075; ENST00000608805/Downstream/7744;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/11800, chr9-CpG: 19/Downstream/983
Upstream sequence
tcccaagtagccgggattataggtgcgcaccaccacgcccagctaattttttgtatctttactagagacggggtttcaccatgctggccaggctggtctc
Downstream sequence
aaactcctgacctcgtgatccgtccacttcggcctcccaaagtactgggattacaggcataagctaccgctcccagccacagaaatcaatttctatatgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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