VISDB Viral Integration Site DataBase

VIS ID

TVIS30013776

Fusion event

HIV-GPR107 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q34.11

Reference genome

Start

End

132850220/130087941 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-221-3p ; hsa-mir-26b-5p ; hsa-mir-578 ; hsa-mir-29b-2-5p ; hsa-mir-573 ; hsa-mir-3616-5p ; hsa-mir-488-3p ; hsa-mir-526b-5p ; hsa-mir-6794-3p ; hsa-mir-4795-5p ; hsa-mir-4635 ; hsa-mir-146a-3p ; hsa-mir-4714-5p ; hsa-mir-4639-3p ; hsa-mir-140-5p ; hsa-mir-7847-3p ; hsa-mir-6797-5p ; hsa-mir-7106-5p ; hsa-mir-1249-5p ; hsa-mir-6894-5p ; hsa-mir-765 ; hsa-mir-7154-3p ; hsa-mir-766-5p ; hsa-mir-3202 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-3179 ; hsa-mir-6125 ; hsa-mir-6783-5p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-4779 ; hsa-mir-4769-3p ; hsa-mir-4743-3p ; hsa-mir-6888-3p ; hsa-mir-3182 ; hsa-mir-215-3p ; hsa-mir-6773-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-1237-3p ; hsa-mir-5088-3p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-5196-3p ; hsa-mir-4469 ; hsa-mir-3938 ; hsa-mir-1253 ; hsa-mir-1343-3p ; hsa-mir-149-3p ; hsa-mir-185-5p ; hsa-mir-187-5p ; hsa-mir-2052 ; hsa-mir-222-3p ; hsa-mir-3150b-3p ; hsa-mir-3665 ; hsa-mir-4306 ; hsa-mir-4644 ; hsa-mir-4728-5p ; hsa-mir-4736 ; hsa-mir-4784 ; hsa-mir-485-5p ; hsa-mir-486-3p ; hsa-mir-5009-3p ; hsa-mir-5197-3p ; hsa-mir-548av-3p ; hsa-mir-548g-3p ; hsa-mir-548v ; hsa-mir-629-5p ; hsa-mir-6721-5p ; hsa-mir-6742-3p ; hsa-mir-6783-3p ; hsa-mir-6785-5p ; hsa-mir-6839-3p ; hsa-mir-6852-5p ; hsa-mir-6873-5p ; hsa-mir-6883-5p ; hsa-mir-6884-5p ; hsa-mir-764 ; hsa-mir-7974 ; hsa-mir-939-3p

Nearest miRNA

hsa-let-7a-1/Upstream/218270; hsa-mir-12126/Downstream/153446;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/33605, chr9-CpG: 142/Downstream/83993

Upstream sequence

acaggtcgtgtcttaagtatacggtttgttcagtactgacaaatgcatatatacccatgtaattcactgtctcaatatttctgtgtttccatcttctgcg

Downstream sequence

aaagcccctctatccccataagcactgttctgatttctttttccatggatcattttgcctgttcAACAATGTTTGTATGTTCTTTAAGCTTAGTAACCAT