Basic Information
VIS ID
TVIS30013777
Fusion event
HIV-LOC105376299 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.13
Reference genome
GRCh37/hg19
Start
134210298/131334911 (Hg38)
End
134210298/131334911 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105376299
Nearest miRNA
hsa-let-7a-1/Upstream/708548; hsa-mir-126/Downstream/1610796;
Nearest TSS
ENST00000422679/Upstream/45099; ENST00000646130/Downstream/38725;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/26685, chr9-CpG: 45/Downstream/38390
Nearby gene
PLPP7(No orient, 25649)
Upstream sequence
CAGGGCCGGTGGGAGGGAGAGGGTGCCTGGGGAGTTAAGAATATCCCTGCAGTGCTCAGCCTCTGGGTCTTGTGATGCCGAAACTCAAGCGCCCCCTGAC
Downstream sequence
TCAGCAGGATATTAATAAGCCTGGCCGGTTCCCAGGGGGCCGGCTCTGCCAGGGGCTGGAACAGAAGGACTCCCAGCCCTGCGGCCCGGATCCCCCTCCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate