VISDB Viral Integration Site DataBase

VIS ID

TVIS30013781

Fusion event

HIV-RAPGEF1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q34.13

Reference genome

Start

End

134524566/131649179 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-615-3p ; hsa-mir-193b-3p ; hsa-mir-339-5p ; hsa-mir-27b-3p ; hsa-mir-25-3p ; hsa-mir-4709-3p ; hsa-mir-4452 ; hsa-mir-3127-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-211-3p ; hsa-mir-506-5p ; hsa-mir-9500 ; hsa-mir-6510-5p ; hsa-mir-6864-5p ; hsa-mir-561-5p ; hsa-mir-3175 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-6809-5p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-3202 ; hsa-mir-3179 ; hsa-mir-7515 ; hsa-mir-6830-5p ; hsa-mir-4475 ; hsa-mir-541-5p ; hsa-mir-3646 ; hsa-mir-203a-3p ; hsa-mir-3941 ; hsa-mir-483-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-5692a ; hsa-mir-6881-3p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-6744-5p ; hsa-mir-942-5p ; hsa-mir-550b-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-766-3p ; hsa-mir-6787-3p ; hsa-mir-877-3p ; hsa-mir-5193 ; hsa-mir-6849-3p ; hsa-mir-508-5p ; hsa-mir-3145-5p ; hsa-mir-432-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6736-3p ; hsa-mir-185-3p ; hsa-mir-4722-3p ; hsa-mir-4763-5p ; hsa-mir-4769-3p ; hsa-mir-6727-3p ; hsa-mir-6798-5p ; hsa-mir-6805-5p ; hsa-mir-6817-5p ; hsa-mir-6829-5p ; hsa-mir-6846-5p ; hsa-mir-6848-5p ; hsa-mir-6882-3p ; hsa-mir-6894-3p ; hsa-mir-95-5p

Nearest miRNA

hsa-let-7a-1/Upstream/1022816; hsa-mir-126/Downstream/1296528;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/94086, chr9-CpG: 156/Downstream/90134

Upstream sequence

tggagtgcagtggtgtgatctcggctcactgcaacctctgccgcccgggttcaagtgattctcctgcctcagcctcccaagcagctgggattacaggcgc

Downstream sequence

ctgccactatgcctggctaaattttttttttttttttttttttttttgtatttttagtagagacggagttttgtcatgttggccaggctggtcttgaact