Fusion event
HIV-SETX integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
135222282/132346895 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-let-7a-1/Upstream/1720532; hsa-mir-126/Downstream/598812;
Upstream sequence
aaaaatagaaaaattagctaggtgtggtgcatgcctacagtcctagcttctctggaggctgaagcaaaaggatcacttgagcccaagaatctgaagctac
Downstream sequence
agtgagctatgattgtgccactgtactccagtctggatgacatagggaaaccctgcctctaagagaaaaagaaaaCAggccaggcacactggctcctgcc
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.