Basic Information
VIS ID
TVIS30013792
Fusion event
HIV-EHMT1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
140629505/137735053 (Hg38)
End
140629505/137735053 (Hg38)
Orient
-
Location type
Intronic
Target gene
EHMT1
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-30e-5p ; hsa-mir-125b-5p
Nearest miRNA
hsa-let-7a-1/Upstream/284967; hsa-mir-602/Downstream/103366;
Nearest TSS
ENST00000422679/Upstream/18126; ENST00000478940/Downstream/3554;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/16824, chr9-CpG: 21/Downstream/17129
Upstream sequence
tagcaggttgaaaagaaagaacactagacagtaacttgaagccatatggagaagtaaagacatgggcagttataaaagctagtattgtaacagtggtttg
Downstream sequence
tacctccactttttgttttctgtaagatctaagagacaaatccgtttaaaaaattagtctgcaagctagtatcattgcaactttggtttgtaactccaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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