Basic Information
VIS ID
TVIS30013796
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
15183599/15165477 (Hg38)
End
15183599/15165477 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3690-1/Upstream/1575131; hsa-let-7f-2/Downstream/1461535;
Nearest TSS
ENST00000429181/Upstream/256555; ENST00000463891/Downstream/89288;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/291865, chrX-CpG: 66/Downstream/169770
Nearby gene
ASB9(No orient, 78510)
Upstream sequence
TCACTTTGGAAATTATTTGGGAAAGGTTTATTAATCAAAAATCCTTGAGTTAAAATATGATTTCTTTATTATGCCAAAGGTTTCAGTGCAGGTTAACATG
Downstream sequence
TTCCAATCCCTATAATAATCTGATAACCTGATAGACAGGGAAGGATTAATGCTGATTCTAATGGCACAAAACTGGCAGTCTCATGAAAAGGACTAAATAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate