Basic Information
VIS ID
TVIS30013797
Fusion event
HIV-GRPR integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
16145723/16127600 (Hg38)
End
16145723/16127600 (Hg38)
Orient
-
Location type
Intronic
Target gene
GRPR
miRNAs that regulate target gene
hsa-mir-17-3p
Nearest miRNA
hsa-mir-3690-1/Upstream/2537254; hsa-let-7f-2/Downstream/499412;
Nearest TSS
ENST00000429181/Upstream/4044; ENST00000400004/Downstream/30229;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/271961, chrX-CpG: 95/Downstream/584202
Upstream sequence
CAGTGGTTGCACTGATGTGTTCCTGGCTCTGTTTCCTGGCTTATGCTGTGTCCCACCCGCTCTCCAGAATGCTTTCTCCTTTCCTAAATACAGACTGTAT
Downstream sequence
TCCTCATCCCATGTGGCATTTgggcttggaatgggtatcaacaaacctgcattttagacattttcctgccattactacccgtatgagaaagtgggactaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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