Basic Information
VIS ID
TVIS30013801
Fusion event
HIV-MAP7D2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p22.12
Reference genome
GRCh37/hg19
Start
20079776/20061658 (Hg38)
End
20079776/20061658 (Hg38)
Orient
+
Location type
Intronic
Target gene
MAP7D2
miRNAs that regulate target gene
hsa-mir-505-5p
Nearest miRNA
hsa-mir-23c/Upstream/44471; hsa-let-7f-2/Downstream/8433897;
Nearest TSS
ENST00000429181/Upstream/35715; ENST00000424026/Downstream/54974;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/70336, chrX-CpG: 139/Downstream/54427
Upstream sequence
GGTCGGGCAGCCTCCTGCTTCCCTCCACCACATTAGGGGTGCAAGGAAGCACACAAATAGAAAATTACCCAGAAGGGAAACCACAAAAGATTCAGCTGCA
Downstream sequence
TCAGGACCAACCATATGGCATAAAACTCCCTCACCTCCAAGAAGGGGGAGCTGTTCTACTTAATTTAACATGCCTCCAGCACTAATGTTCTGTAGAGAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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