Basic Information
VIS ID
TVIS30013802
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
25561219/25543102 (Hg38)
End
25561219/25543102 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-23c/Upstream/5525915; hsa-let-7f-2/Downstream/2952453;
Nearest TSS
ENST00000429181/Upstream/526682; ENST00000423914/Downstream/335237;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/519857, chrX-CpG: 30/Downstream/1014539
Nearby gene
ARX(No orient, 527154)
Upstream sequence
tcctcacaatcatgacagaagatgaatgaggaacaaagtcacgtcttacatgatggcagacaaagagcatgtacaggggaactcccctttataaaaccat
Downstream sequence
cagatctcatgagacttcatagaacagcatgagacagattgcccccatgattcaattaactcccactgggtcccttccatgacatgtaggaattatgaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate