Basic Information
VIS ID
TVIS30013805
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
33387566/33369449 (Hg38)
End
33387566/33369449 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-23c/Upstream/727890; hsa-let-7f-2/Downstream/4654446;
Nearest TSS
ENST00000429181/Upstream/30008; ENST00000445233/Downstream/357059;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/2102547, chrX-CpG: 36/Downstream/356864
Nearby gene
DMD(No orient, 29840)
Nearest cancer related gene
DMD(TSG, No orient, 29840)
Upstream sequence
ATCACTAGTGGGTATACTATGTCTTACTCTTCTCTATAAATAGAGATGTGTAGAAAATTTTAATATTTCACATGTTTAAGGGAAAAATGTTGTAGGAATA
Downstream sequence
TCAGTAGCTACTTGAGAAAATTATTCTATTATGTATTTACCAATTCTAATTAATTAAAGATACACGGTCTAATTTTAATTTATCTTCTTATTCCACACTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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