Basic Information
VIS ID
TVIS30013807
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.4
Reference genome
GRCh37/hg19
Start
39817171/39957917 (Hg38)
End
39817171/39957917 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1587/Upstream/120304; hsa-let-7f-2/Downstream/5788240;
Nearest TSS
ENST00000429181/Upstream/109559; ENST00000447651/Downstream/51359;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/135753, chrX-CpG: 314/Downstream/47355
Nearby gene
BCOR(No orient, 93328)
Upstream sequence
tgtcatattgcaggtgatggtaatggctatggggaaacaagaatggggttggggggttgcaatttaaataggtggtttgggggaggcctaatgggaagga
Downstream sequence
gacttaagcaagcaagccatgaggatttctgcaggaagggcatgtcagacgggggaacagccagtgcaagggccctgaggcaggaatgtgcctggtgtgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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