Basic Information
VIS ID
TVIS30013819
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
49388527/49623924 (Hg38)
End
49388527/49623924 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1587/Upstream/2036419; hsa-let-7f-2/Downstream/379224;
Nearest TSS
ENST00000429181/Upstream/23749; ENST00000478785/Downstream/72069;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/24377, chrX-CpG: 57/Downstream/255379
Nearby gene
GAGE1(No orient, 15388)
Upstream sequence
tttgtctcttttgatctttgtgggtttaaagtctgttttatccaagactaggattgcaacccctgcctttttttgttttccatttgcttggtagatcttc
Downstream sequence
ctccatccctttattttgagcctatgtgtgtctctgcacgtgagatgggtttcctgaatacagcactctgatgggtcttgactctttatccaatttgcca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate