Basic Information
VIS ID
TVIS30013820
Fusion event
HIV-CCNB3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
50094374/50351375 (Hg38)
End
50094374/50351375 (Hg38)
Orient
-
Location type
Intronic
Target gene
CCNB3
Nearest miRNA
hsa-mir-1587/Upstream/336692; hsa-let-7f-2/Downstream/1985182;
Nearest TSS
ENST00000429181/Upstream/9668; ENST00000252677/Downstream/119363;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/69819, chrX-CpG: 21/Downstream/118055
Upstream sequence
CTCTGAGCTTCACCCCTTGGTCAGACAGCTGAACAAACTGCTGACTTTCAGTTCTTACGATAGTCTCAAGGCTGTGTATTACAAGTATTCTCACCCGTAA
Downstream sequence
GTACTAAGCCCCGGATGAGGTTGGGTTTGTGTTCATTTATTGGGAGGCTTTAAAATACTAGACCGAGACTAGCCTCACTTAAGAGAAAAAGATTCAGGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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