Basic Information
VIS ID
TVIS30013821
Fusion event
HIV-DGKK integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
50120121/50377122 (Hg38)
End
50120121/50377122 (Hg38)
Orient
+
Location type
Intronic
Target gene
DGKK
Nearest miRNA
hsa-mir-1587/Upstream/362439; hsa-let-7f-2/Downstream/1959435;
Nearest TSS
ENST00000429181/Upstream/35415; ENST00000252677/Downstream/93616;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/95566, chrX-CpG: 21/Downstream/92308
Upstream sequence
ACAGTGGGTAGAGGGGAAGGAGGGCCCCCTGTCCATTCCCCCTGTCATACCCATCTATATACCTATACAAGTATCCATCATTTTATTCAATCTCTTCTGG
Downstream sequence
ACTATGCCCTTTAGTTTTTGTTGTTCTGAGTATGCTGGATTTTGGGACACCAGGCTTGGATCATACACATGTCTGGTTTCTAGAAGCTCCCATATGAAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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