Basic Information
VIS ID
TVIS30013823
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
51774566/52031470 (Hg38)
End
51774566/52031470 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1587/Upstream/2016787; hsa-let-7f-2/Downstream/305087;
Nearest TSS
ENST00000429181/Upstream/132859; ENST00000624269/Downstream/21706;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/136490, chrX-CpG: 36/Downstream/37584
Nearby gene
MAGED4(No orient, 30357)
Upstream sequence
GATAAGTTTCTCTTAGGTGATCAGTTTCCAAATATGCCTCCACATAAACAGGTGGCATCTTCCCTATACTCTCCATAATCTGTTTTATAATGCTGGCTCC
Downstream sequence
ACAACTTTTTCTCCATGACTGGAAAATCAGTTCTCTGTTCTCATAGGTTGTGGTCAAGCCTGCATTCCTCTGCCATCCGAAAATAAACCCACTACTGAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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