Basic Information
VIS ID
TVIS30013827
Fusion event
HIV-FTX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
73480585/74260750 (Hg38)
End
73480585/74260750 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
FTX
Nearest miRNA
hsa-let-7f-2/Upstream/42132; hsa-mir-105-1/Downstream/26354;
Nearest TSS
ENST00000429181/Upstream/18602; ENST00000339534/Downstream/31325;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/155063, chrX-CpG: 29/Downstream/31608
Upstream sequence
gctcagacctctaaccccagcactttgggaggctcaggcgggtgatctgttttagcccaggagtttgagaccagcctagtttgagatcggcctgtgatac
Downstream sequence
atggcagaaaccccgtctctacaaaaaaaaatccaaaaaattagccaggcatggtggtacatgtctgtagtcctggctactcagaagactgaggtgggag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate