Basic Information
VIS ID
TVIS30013830
Fusion event
HIV-LOC105373287 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
82018978/82763970 (Hg38)
End
82018978/82763970 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105373287
Nearest miRNA
hsa-let-7f-2/Upstream/3862721; hsa-mir-105-1/Downstream/1461782;
Nearest TSS
ENST00000429181/Upstream/1508476; ENST00000373200/Downstream/744291;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/1759976, chrX-CpG: 63/Downstream/744593
Nearby gene
POU3F4(No orient, 744291)
Upstream sequence
AAAATGgtggcaaagtatagtagtaccatgtaggtagaataagataaactggggttgaaattctgtttccgctatttacttcctgtgtgatcttggagaa
Downstream sequence
gttacttaacttcttgaacctcagctatctcatttgcaaaacagaggtaataaccattatacttagcctactgcctGGGACCTAGTAGTGGCCCAATAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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