Basic Information
VIS ID
TVIS30013831
Fusion event
HIV-ARMCX5-GPRASP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
101863548/102608620 (Hg38)
End
101863548/102608620 (Hg38)
Orient
+
Location type
Intronic
Target gene
ARMCX5-GPRASP2
Nearest miRNA
hsa-let-7f-2/Upstream/7545394; hsa-mir-105-1/Downstream/4031194;
Nearest TSS
ENST00000429181/Upstream/7483; ENST00000466098/Downstream/42746;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/9021, chrX-CpG: 89/Downstream/42453
Upstream sequence
ctccttagttaaatttattcctgggtatttcattcttttatatgctattgtaaatggaattattttctttctttttcatattgttcattgctggtatata
Downstream sequence
gaaacataactgatatgtgttgattctgtcacttgcaactttgctgaatttattcactctagtagtttttttgtggattcttttgaaatttctatctata
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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