Basic Information
VIS ID
TVIS30013832
Fusion event
HIV-VSIG1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
107294283/108051053 (Hg38)
End
107294283/108051053 (Hg38)
Orient
-
Location type
Intronic
Target gene
VSIG1
miRNAs that regulate target gene
hsa-mir-142-3p ; hsa-mir-5698 ; hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-891a-3p ; hsa-mir-143-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-6499-3p ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-660-3p ; hsa-mir-6890-3p ; hsa-mir-1306-5p ; hsa-mir-4284 ; hsa-mir-5693
Nearest miRNA
hsa-let-7f-2/Upstream/1411157; hsa-mir-105-1/Downstream/2004276;
Nearest TSS
ENST00000429181/Upstream/5988; ENST00000485533/Downstream/13686;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/114626, chrX-CpG: 58/Downstream/40137
Upstream sequence
gaaagaaacctagtcctggccattcctgatacccaactgaacaacagagggcagcccaggtaagcttactcctccctcagagtccctctgacaacatcag
Downstream sequence
gtaggcccaacaccacaggtaaggggggatcttcagaaaccccaccaacaacagtggacaaaagaagcatttgccttctccccaggcctgagatgtccca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate