Basic Information
VIS ID
TVIS30013833
Fusion event
HIV-AMMECR1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q23
Reference genome
GRCh37/hg19
Start
109505194/110261966 (Hg38)
End
109505194/110261966 (Hg38)
Orient
+
Location type
Intronic
Target gene
AMMECR1
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-let-7a-5p ; hsa-mir-375 ; hsa-mir-124-3p ; hsa-mir-215-5p ; hsa-mir-181a-5p ; hsa-mir-192-5p ; hsa-mir-10b-3p ; hsa-mir-92a-3p ; hsa-mir-297 ; hsa-mir-3924 ; hsa-mir-567 ; hsa-mir-511-3p ; hsa-mir-4789-3p ; hsa-mir-8485 ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p
Nearest miRNA
hsa-let-7f-2/Upstream/179748; hsa-mir-105-1/Downstream/2518752;
Nearest TSS
ENST00000429181/Upstream/117111; ENST00000520821/Downstream/55790;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/258521, chrX-CpG: 83/Downstream/55509
Upstream sequence
gggtttgaatcctggttctatcacttaatagatgtgtgagtgggtaaattatttaaattacctaattctcagtttcctcattttgaaaatgtagatatta
Downstream sequence
gtacctaagggttattacaaggactatgcatgtaaagctcctcaacaatgtctgacatagtaaattcttaataaatggcagcCATTAACAAAAATAATCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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