Basic Information
VIS ID
TVIS30013836
Fusion event
HIV-LAMP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q24
Reference genome
GRCh37/hg19
Start
119571902/120438047 (Hg38)
End
119571902/120438047 (Hg38)
Orient
-
Location type
UTR3
Target gene
LAMP2
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-103a-3p ; hsa-mir-21-5p ; hsa-mir-16-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-4537 ; hsa-mir-6849-3p ; hsa-mir-6746-3p ; hsa-mir-4438 ; hsa-mir-4279 ; hsa-mir-3152-3p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-451b ; hsa-mir-606 ; hsa-mir-377-3p ; hsa-mir-8485 ; hsa-mir-548c-3p ; hsa-mir-1276 ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-27a-3p ; hsa-mir-140-3p ; hsa-mir-3914 ; hsa-mir-873-5p ; hsa-mir-548aj-5p ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-548p ; hsa-mir-548x-5p
Nearest miRNA
hsa-let-7f-2/Upstream/791199; hsa-mir-105-1/Downstream/932925;
Nearest TSS
ENST00000429181/Upstream/75935; ENST00000493879/Downstream/11021;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/126630, chrX-CpG: 29/Downstream/123041
Upstream sequence
cgggttcaagtgattctcctgcctcagcctcccgagtaactgggattacaggcgcccaccaccacgcccagctaattttttgtatttctgatagagatgg
Downstream sequence
ggtttcaccatgttggccaggctggtctcaaactcctggcctcaagtgatccacccacttcggcctcccaaagtgctgggattacaggcgtgagccgcca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate