VISDB Viral Integration Site DataBase

VIS ID

TVIS30013839

Fusion event

HIV-ZNF280C integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chrX

Cytoband

q26.1

Reference genome

Start

End

129368293/130234319 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-421 ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-7847-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7154-3p ; hsa-mir-6087 ; hsa-mir-383-3p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-1292-3p ; hsa-mir-25-5p ; hsa-mir-4327 ; hsa-mir-4459 ; hsa-mir-455-3p ; hsa-mir-4695-5p ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6807-5p ; hsa-mir-6840-3p

Nearest miRNA

hsa-let-7f-2/Upstream/8863266; hsa-mir-105-1/Downstream/3935059;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/61866, chrX-CpG: 58/Downstream/34165

Upstream sequence

acaggcaggtggaaacaataagaaagcaagggttgtgagcctgatatcaaacaaaaagcactgaacagacaaaaaggacactataaaaatgctaaagggt

Downstream sequence

gcacccacaatgaaTCGTAAGAGATGGATACATCTATGTCCTAAAGAGCAACACCATGAAACAGAATTGGAAGATATCAAGGGAAACAGTGGTAATGTGA