Basic Information
VIS ID
TVIS30013842
Fusion event
HIV-MOSPD1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
134030811/134896781 (Hg38)
End
134030811/134896781 (Hg38)
Orient
+
Location type
Intronic
Target gene
MOSPD1
miRNAs that regulate target gene
hsa-mir-152-3p ; hsa-mir-181a-5p
Nearest miRNA
hsa-let-7f-2/Upstream/350070; hsa-mir-105-1/Downstream/1654097;
Nearest TSS
ENST00000429181/Upstream/57608; ENST00000441841/Downstream/2753;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/99456, chrX-CpG: 53/Downstream/17895
Upstream sequence
GGTGCAGTTTTGAAGTAGTTGACCATGTTTGAAGTGGTAGATGATTTTTCTAGTAATTATTCTTAGCTGCCTGATTATTTTAAAGTTAATAATGTGTAAG
Downstream sequence
ACCTCAAAAGGGCTTTAAAAACAACCCAAAACTACCTGGTTGAAACGACTGCTCAAAAAATAAACTTTCAGTTAAATGTTCCTTTAATCTTTTTTCCTCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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