VISDB Viral Integration Site DataBase

VIS ID

TVIS30013843

Fusion event

HIV-ZNF449 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chrX

Cytoband

q26.3

Reference genome

Start

End

134491784/135357859 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-4524a-5p ; hsa-mir-5007-3p ; hsa-mir-4524b-5p ; hsa-mir-6838-5p ; hsa-mir-411-5p ; hsa-mir-3935 ; hsa-mir-4423-3p ; hsa-mir-5582-5p ; hsa-mir-2278 ; hsa-mir-297 ; hsa-mir-223-5p ; hsa-mir-567 ; hsa-mir-6499-3p ; hsa-mir-4302 ; hsa-mir-380-3p ; hsa-mir-411-3p ; hsa-mir-379-3p ; hsa-mir-4495 ; hsa-mir-4519 ; hsa-mir-4274 ; hsa-mir-944 ; hsa-mir-562 ; hsa-mir-631 ; hsa-mir-3661 ; hsa-mir-499b-5p ; hsa-mir-4781-3p ; hsa-mir-646 ; hsa-mir-619-3p ; hsa-mir-503-5p ; hsa-mir-6798-3p ; hsa-mir-6503-3p ; hsa-mir-3622a-5p ; hsa-mir-4759 ; hsa-mir-4640-3p ; hsa-mir-335-3p ; hsa-mir-3686 ; hsa-mir-4684-5p ; hsa-mir-452-3p ; hsa-mir-4742-3p ; hsa-mir-4778-5p ; hsa-mir-4262 ; hsa-mir-3675-3p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-181d-5p

Nearest miRNA

hsa-let-7f-2/Upstream/811148; hsa-mir-105-1/Downstream/1193019;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/12727, chrX-CpG: 101/Downstream/63854

Upstream sequence

ttttttgtttgttttaatgcctattttgactggctctcttgtggttgctacttgtatgatatatctttttccatccctttacattcaatcggtttgtatc

Downstream sequence

tttgaatctaaagtatacctcttataaacagtatatagttggatcttttcaatccagtcagaccttctctgctttctgattaagtcatttaatgtattta