Basic Information
VIS ID
TVIS30013844
Fusion event
HIV-MMGT1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
135046701/135964542 (Hg38)
End
135046701/135964542 (Hg38)
Orient
-
Location type
UTR3
Target gene
MMGT1
miRNAs that regulate target gene
hsa-mir-410-3p ; hsa-mir-548aw ; hsa-mir-4671-3p ; hsa-mir-6073 ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-142-3p ; hsa-mir-454-3p ; hsa-mir-130a-3p ; hsa-mir-130b-3p ; hsa-mir-301a-3p ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-19b-3p ; hsa-mir-4295 ; hsa-mir-19a-3p ; hsa-mir-541-5p ; hsa-mir-6757-3p ; hsa-mir-580-5p ; hsa-mir-4432 ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-23b-3p ; hsa-mir-23c ; hsa-mir-6807-3p ; hsa-mir-217
Nearest miRNA
hsa-let-7f-2/Upstream/1417831; hsa-mir-105-1/Downstream/586336;
Nearest TSS
ENST00000429181/Upstream/68299; ENST00000627534/Downstream/9299;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/442340, chrX-CpG: 93/Downstream/8970
Upstream sequence
GCTGATGGTAGAAGGTATATGGGAGCAGGGTAGGGTGAAAAGTCACAAATAAATTAAAAACTGGCAAGTACTTCTGAAGCAGAGCCACTTTTTAGGGGAC
Downstream sequence
ACAAGAAAAACTGTTAAATCACCATTTTGGTCTCATCAGGGAAGTCCATTTGTTAAGAATTGAAGACCATTTTACTATAATTCATGCTGCAAAACACAGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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