Basic Information
VIS ID
TVIS30013845
Fusion event
HIV-MAP7D3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
135306668/136224509 (Hg38)
End
135306668/136224509 (Hg38)
Orient
+
Location type
Intronic
Target gene
MAP7D3
miRNAs that regulate target gene
hsa-mir-193b-3p
Nearest miRNA
hsa-let-7f-2/Upstream/1677798; hsa-mir-105-1/Downstream/326369;
Nearest TSS
ENST00000429181/Upstream/3696; ENST00000394141/Downstream/2924;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/76619, chrX-CpG: 88/Downstream/26368
Upstream sequence
agagagaaatgatcagcgtttgaggtgatggatttgctaattatcctgatttgatcattacacattgtatacaaaaaaaaaaaAGAAAAAaagaaaaaga
Downstream sequence
aaagataagctgtaaactgggagaaggtatctgcaacacataaccaaaaaagaagcagtatctataacatttaaagaaccacaatgagacaaatcaaccc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate