Basic Information
VIS ID
TVIS30013851
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
136545991/137463832 (Hg38)
End
136545991/137463832 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/912872; hsa-mir-105-1/Downstream/1203879;
Nearest TSS
ENST00000429181/Upstream/432158; ENST00000478471/Downstream/100093;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/35077, chrX-CpG: 53/Downstream/83553
Nearby gene
ZIC3(No orient, 102355)
Upstream sequence
AAAATACTTCTTCCAAAGAGGTAAAAATGAGTTGATTATTCACCAAAACCTATTTGCACAGATGAGTTTTCACATTTGTAAGCAATAATGTCAACAAAAA
Downstream sequence
ATACTTGTCCCCCTCTGATTTGATCCCTAATATGTGACTGATAATTTACTTAAAAATAATTTCTAATTGGTAATGAGAGGTTCCCCCCCCAACCCCTGTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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