Basic Information
VIS ID
TVIS30013865
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh37/hg19
Start
153725476/154497142 (Hg38)
End
153725476/154497142 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRAXE ; FRAXF
Nearest miRNA
hsa-let-7f-2/Upstream/46756; hsa-mir-1184-1/Downstream/271454;
Nearest TSS
ENST00000429181/Upstream/6452; ENST00000492469/Downstream/10449;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/6026, chrX-CpG: 19/Downstream/9516
Nearby gene
SLC10A3(No orient, 6447)
Upstream sequence
tctacctgaagtccatcgttaaattctattttttctgttctgtggtcttttggccatcatctggaagccccgtgccagcatactctgttagcagctgtac
Downstream sequence
ttctgcagaagtttcacaagtaacaagtacaaattgttaaaaggaaaatacaaattaatattagtagtaatatgataccaccagttttcataatagtttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate