Basic Information
VIS ID
TVIS30013870
Fusion event
HIV-chrY integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrY
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
8969568/9131959 (Hg38)
End
8969568/9131959 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3690-2/Upstream/4525731; hsa-mir-12120/Downstream/4347218;
Nearest TSS
ENST00000430575/Upstream/314577; ENST00000640033/Downstream/202873;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/851790, chrY-CpG: 24/Downstream/204567
Nearby gene
RBMY1A3P(No orient, 185102)
Upstream sequence
acttataatgtccagtgatccttttagatgtttgagtgttttgggaatgggaaagaaggagatgggattaattctctcctttactaatgttttggGTTTT
Downstream sequence
CAacagccttattaatgagacagaggttctgatctagcctccattcttcattgtgtttctgtacctctaatatttgagtgttgttaagacgttgcagagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate