Basic Information
VIS ID
TVIS30013872
Fusion event
HIV-chrY integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrY
Cytoband
q12
Reference genome
GRCh37/hg19
Start
59209521/57063372 (Hg38)
End
59209521/57063372 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12120/Upstream/43584106;
Nearest TSS
ENST00000430575/Upstream/31334882;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/30435975, chrY-CpG: 36/Downstream/4273
Nearby gene
VAMP7(No orient, 4428)
Upstream sequence
CTTAAAACTAATCACTCAATATCTGATAGCAACAGTATCTATCTCAAAGTCATTAGTATACCTTGGTTATTAAGATAATTCAAATTAGCCCTTCCAGTGA
Downstream sequence
AGTTGACATCATCTTTGCTATTTTTAGAAACTTTGAAACTTAAGAAAATGAGTTGCTTCTTCACTGCTACACTTCCACTTTCTGCACCAAGCCTTGGGCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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