Basic Information
VIS ID
TVIS30013876
Fusion event
HIV-chr19 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
Nontumor
Disease
AIDS dementia (AD)
Quality evaluation
Normal
Reported year
2003
PubMed ID
12843741
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
47391249/46887992 (Hg38)
End
47391249/46887992 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-mir-10395/Upstream/178638; hsa-let-7e/Downstream/338950;
Nearest TSS
ENST00000633603/Upstream/37000; ENST00000596593/Downstream/30684;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/26447, chr19-CpG: 40/Downstream/116057
Nearby gene
ARHGAP35(No orient, 30684)
Upstream sequence
GTCTTGTCTGAGTTTGCCTGCTGAGTGGAACCCTCATTGTGCTGGTACTTAGTACTTTGCCttttttttttttttctgagacggagtcttgctctgttgc
Downstream sequence
ccaggctggagtgcagtggcacgatctcggcttactgcaagctccgcctcctgggttcatgccattctcctgcctcagcctcctgagtagctgggactac
Reference
Mack, K. D., et al. HIV insertions within and proximal to host cell genes are a common finding in tissues containing high levels of HIV DNA and macrophage-associated p24 antigen expression. J Acquir Immune Defic Syndr ,2003,33(3): 308-320.
Curate