Basic Information
VIS ID
TVIS30013878
Fusion event
HIV-SETX integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
Nontumor
Disease
AIDS dementia (AD)
Quality evaluation
Normal
Reported year
2003
PubMed ID
12843741
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.13
Reference genome
GRCh37/hg19
Start
135208004/132332617 (Hg38)
End
135208004/132332617 (Hg38)
Orient
-
Location type
Intronic
Target gene
SETX
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-18a-3p ; hsa-mir-377-3p ; hsa-mir-539-5p ; hsa-mir-485-3p ; hsa-mir-432-5p ; hsa-mir-4477b ; hsa-mir-4694-5p ; hsa-mir-24-3p ; hsa-mir-3934-3p ; hsa-mir-2467-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-586 ; hsa-mir-541-5p
Nearest miRNA
hsa-let-7a-1/Upstream/1706254; hsa-mir-126/Downstream/613090;
Nearest TSS
ENST00000422679/Upstream/20761; ENST00000393215/Downstream/22368;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/90075, chr9-CpG: 93/Downstream/21930
Upstream sequence
TTGTATCCTCCACTGCATCTGAAACAGTGCCTGTGTCTAATAAGCTCACAAGAAACAAAGTAGTTAGATGAAGACAATTATGAAAAGTTTCTCAAAGAGG
Downstream sequence
TAATTAAAATTTTGAAGACAAggctgggttcagtggctcacaccagtaaatcccaacactttgggaggccgaggcaggaggactgcttgaggtcaggagt
Reference
Mack, K. D., et al. HIV insertions within and proximal to host cell genes are a common finding in tissues containing high levels of HIV DNA and macrophage-associated p24 antigen expression. J Acquir Immune Defic Syndr ,2003,33(3): 308-320.
Curate