Basic Information
VIS ID
TVIS30013885
Fusion event
HIV-chr11 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
Nontumor
Disease
AIDS dementia (AD)
Quality evaluation
Normal
Reported year
2003
PubMed ID
12843741
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
62517006/62749534 (Hg38)
End
62517006/62749534 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-129-2/Upstream/182463; hsa-let-7a-2/Downstream/40281;
Nearest TSS
ENST00000527297/Upstream/9586; ENST00000533442/Downstream/2565;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/21879, chr11-CpG: 39/Downstream/4364
Nearby gene
ZBTB3(No orient, 1429)
Upstream sequence
AAAACAACTTACAGTTCTTGGTTAACTAAGTTCAACttttcattattattttatagtgacaggcaggcctcactatgttgcccaggctaatctgtaactc
Downstream sequence
ctagccacaagcgatccttcacctcagcctcccaaagtgctgggagaacaggcatgagccaccCCAACAGCCCTTCAAACAATGttgttttttttttttt
Reference
Mack, K. D., et al. HIV insertions within and proximal to host cell genes are a common finding in tissues containing high levels of HIV DNA and macrophage-associated p24 antigen expression. J Acquir Immune Defic Syndr ,2003,33(3): 308-320.
Curate