Basic Information
VIS ID
TVIS30013890
Fusion event
HIV-ANKRD13D integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
Tumor
Disease
AIDS-associated lymphoma (AAL)
Quality evaluation
Normal
Reported year
2003
PubMed ID
12843741
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
67063662/67296191 (Hg38)
End
67063662/67296191 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA11H
Target gene
ANKRD13D
miRNAs that regulate target gene
hsa-mir-505-3p ; hsa-mir-331-3p
Nearest miRNA
hsa-mir-10392/Upstream/250483; hsa-let-7a-2/Downstream/194054;
Nearest TSS
ENST00000527297/Upstream/4053; ENST00000506119/Downstream/1700;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/6413, chr11-CpG: 101/Downstream/7075
Upstream sequence
cttttcatatgttgctagatttggttggttcgtattttgttgaggattttgtgtccatattcataagtgatattggtctgtagttttcttgtgatatatg
Downstream sequence
tctggttttggtatctgggtgatgcctcataactgaagtggaaaatgtcacctctttgtctattttttttaatagtttgcaaataattggtattaatttg
Reference
Mack, K. D., et al. HIV insertions within and proximal to host cell genes are a common finding in tissues containing high levels of HIV DNA and macrophage-associated p24 antigen expression. J Acquir Immune Defic Syndr ,2003,33(3): 308-320.
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