Basic Information
VIS ID
TVIS30013905
Fusion event
HIV-chr4 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
Tumor
Disease
Angioimmunoblastic lymphadenopathy (AILD)
Quality evaluation
Normal
Reported year
2003
PubMed ID
12843741
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q35.1
Reference genome
GRCh37/hg19
Start
184274550/183353397 (Hg38)
End
184274550/183353397 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1184019; hsa-mir-3945/Downstream/1497616;
Nearest TSS
ENST00000502981/Upstream/30971; ENST00000510928/Downstream/91194;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/253171, chr4-CpG: 57/Downstream/45014
Nearby gene
CLDN24(No orient, 30971)
Upstream sequence
gattgtgccactgcactccagcctggctgacagagtgagacctcgtcaaacagaaaaaaaaaaaaaGAGAGATGggctaggagcggtggctcatgcctgt
Downstream sequence
aatcccagcgctttgggaagccaaggcaggtggatcacctgaggtcaggaattcaagaccattcttgccaacatggtgaaactccgcctctactaaaaat
Reference
Mack, K. D., et al. HIV insertions within and proximal to host cell genes are a common finding in tissues containing high levels of HIV DNA and macrophage-associated p24 antigen expression. J Acquir Immune Defic Syndr ,2003,33(3): 308-320.
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