Basic Information
VIS ID
TVIS30013906
Fusion event
HIV-chrX integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
Tumor
Disease
Angioimmunoblastic lymphadenopathy (AILD)
Quality evaluation
Normal
Reported year
2003
PubMed ID
12843741
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.3
Reference genome
GRCh37/hg19
Start
42797194/42937945 (Hg38)
End
42797194/42937945 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105373188 ; LOC107985717
Nearest miRNA
hsa-mir-1587/Upstream/3100332; hsa-let-7f-2/Downstream/2808212;
Nearest TSS
ENST00000429181/Upstream/159698; ENST00000440955/Downstream/239049;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/159689, chrX-CpG: 54/Downstream/716837
Nearby gene
PPP1R2C(No orient, 159708)
Upstream sequence
ggctggtttttgcaatgaagacaatatatggtgaagaactaaagccaactcagagctactgtggtcaacataaaatgtgagaaaacaataattgttgtga
Downstream sequence
taatgtattgagatttgggtaattgttactgtagcatagcttaTGGATGCTAACCAAAACactccttcttttcttttgtgttatattgaaatgtatttta
Reference
Mack, K. D., et al. HIV insertions within and proximal to host cell genes are a common finding in tissues containing high levels of HIV DNA and macrophage-associated p24 antigen expression. J Acquir Immune Defic Syndr ,2003,33(3): 308-320.
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